awesome-spatial-transcriptomics
A curated list of tools, foundation models, datasets and tutorials for spatial transcriptomics and single-cell analysis, ordered the way an analysis goes.
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This is 1 of 90 launches in developer learning resources and directories — see how it stacks up on momentum and crowding →
183 other launches read as similar to this one →
Details
- External ID
- 1407631852
- Source
- GITHUB
- Company
- —
- Product
- awesome-spatial-transcriptomics
- Website domain
- github.com
- Launched
- Oct. 6, 2026
- Cohort
- —
- Upvotes
- 39
- Upvotes percentile
- 0.65
- Tags
- awesome, awesome-list, bioinformatics, computational-biology, deep-learning, foundation-models, genomics, merfish, scrna-seq, single-cell, single-cell-rna-seq, spatial-omics, spatial-transcriptomics, visium, xenium
Enrichment
- Niche
- developer learning resources and directories
- Vertical
- Healthcare
- Function
- Dev tools
- Audience
- Developer
- AI stance
- Not AI
- Project type
- Hobby / open-source project
- Normalized one-liner
- curated list of tools and models for spatial transcriptomics
- Manually corrected
- False
Could you build this?
No While it is formatted as a Markdown list, creating and curating an authoritative guide to spatial transcriptomics tools and foundation models requires a PhD-level background in computational biology and bioinformatics.
What it would actually take: Producing this domain-specific taxonomy requires specialized knowledge in single-cell RNA sequencing, spatial transcriptomics modalities (e.g., Visium, MERFISH, Xenium), and computational bioinformatic pipelines (e.g., Scanpy, Seurat, Squidpy). A general developer or AI assistant lacks the research discernment to evaluate biological validity and foundation model utility across the analysis workflow.
Competitors
Other products that read as similar to this one — 183 launches clear the similarity bar, closest 8 shown.
Attention rank: #58 of 184 (itself plus its competitors, highest first — normalized so YC and Product Hunt are compared fairly).
Launched 334 days after the earliest competitor.
- awesome-EmbeddingGemma · github · 2026-10-12 · 26 upvotes · similarity 0.45
- exhibit-review · github · 2026-09-22 · 7 upvotes · similarity 0.44
- I mapped 8.5M research papers into an interactive atlas · hn · 2026-07-09 · 85 upvotes · similarity 0.44
- SpatialSpeak-VLM · github · 2026-09-29 · 21 upvotes · similarity 0.44
- refgarden · github · 2026-09-18 · 28 upvotes · similarity 0.43
- Frontier Computing – Growing biological brains at scale · yc · 2026-08-31 · 21 upvotes · similarity 0.43
- Anto Biosciences: A Foundation Model for Microbial Communities · yc · 2025-11-07 · 32 upvotes · similarity 0.42
- awesome-fly · github · 2026-09-12 · 382 upvotes · similarity 0.42
Other launches for this product
- No other launches for this product.